June 28, 2025

The Goods and Services Tax (GST) system in India has streamlined indirect taxation and improved transparency. However, certain industries or businesses that deal with an inverted duty structure often face a challenge they pay more tax on inputs than they collect on output sales. To address this imbalance, the government allows businesses to claim a GST refund for an inverted duty structure.

This article explores how to file such a refund, the steps involved, its benefits, eligibility criteria, and FAQs, especially with a focus on using the GST refund portal.

Why is a GST Refund Necessary for Inverted Duty Structure?

An inverted duty structure arises when the GST rate on inputs (raw materials or input services) is higher than the GST rate on output supplies (final goods or services). This results in accumulation of unutilized Input Tax Credit (ITC) in a business’s electronic credit ledger.

Without refunds, this excess credit remains locked, negatively impacting cash flow and working capital. Hence, the GST law provides a mechanism for refund of the unutilized ITC to help maintain financial stability and operational efficiency.

Advantages of Filing a GST Refund under Inverted Duty Structure

  1. Improved Cash Flow: Unlocking blocked ITC helps maintain liquidity for business operations.
  2. Compliance Recognition: Businesses claiming refunds regularly are seen as compliant and eligible for other tax benefits.
  3. Operational Efficiency: Reduces the burden of input costs over time.
  4. Financial Planning: Provides a clear projection of available funds and tax planning.
  5. Encouragement for Exporters: Export-oriented businesses often face inverted duty structures and benefit from refund mechanisms.

Eligibility for GST Refund under Inverted Duty Structure

Businesses are eligible for a GST refund in an inverted duty structure scenario if:

  • They deal in goods/services where input GST is higher than output GST.
  • They are not availing refund under zero-rated supplies (like exports) simultaneously for the same tax period.
  • The inverted duty structure refund claim is not barred by notification (some goods are restricted).
  • The refund is claimed within two years from the end of the relevant tax period.

Important Note: Certain items like coal, petrol, or services where inversion does not exist are excluded from refund eligibility.

Step-by-Step Process to File GST Refund on GST Refund Portal

Filing a refund under the inverted duty structure is an entirely online process facilitated by the GST refund portal. Below is a step-by-step guide:

Step 1: Log in to the GST Portal

  • Visit the GST Portal.
  • Log in using your GSTIN, username, and password.

Step 2: Navigate to Refund Application

  • Go to Services > Refunds > Application for Refund.
  • Select the type of refund: Refund on account of ITC accumulated due to Inverted Tax Structure.

Step 3: Select the Relevant Tax Period

  • Choose the financial year and month/quarter for which you want to file the refund.
  • Click on “Create” to begin a new refund application.

Step 4: Upload Required Documents

Typical documents required include:

  • GSTR-1 and GSTR-3B filings.
  • Invoices for inputs and outputs.
  • Statement 1: Details of inward and outward supplies.
  • Declaration under Rule 89(2)(l) if applicable.
  • Chartered Accountant (CA) certificate if refund amount exceeds Rs. 2 lakhs.

Step 5: Enter Refund Amount and Supporting Data

  • System auto-calculates some fields based on GSTR-1 and GSTR-3B.
  • Manually enter refund amount under “Net ITC” and “Tax Payable on Inverted Rate Supplies”.
  • Ensure no refund is claimed twice and figures match your return filings.

Step 6: Verification and Submission

  • Tick the checkbox declaring correctness.
  • Submit the application using Digital Signature Certificate (DSC) or Electronic Verification Code (EVC).

Step 7: ARN Generation and Acknowledgment

  • Upon submission, an Acknowledgment Reference Number (ARN) is generated.
  • Use the ARN to track refund status on the GST refund portal.

Step 8: Refund Processing by GST Officer

  • The officer may approve, reject, or request more documents.
  • Once approved, refund is credited to the bank account linked to your GSTIN.

Types of Refund under GST (for context)

  1. Refund of Excess Tax Paid: Due to wrong classification or rate.
  2. Refund for Exports/SEZs: Zero-rated supplies without payment of tax.
  3. Refund under Inverted Duty Structure: Focus of this article.
  4. Refund of Pre-deposit for Appeals.
  5. Refund due to Finalization of Provisional Assessment.

Common Mistakes to Avoid

  • Mismatch in GSTR filings and refund application.
  • Claiming refund for items not eligible under inverted duty structure.
  • Late filing (beyond two-year limit).
  • Incorrect document upload or incomplete application.
  • Not reconciling ITC as per books with portal data.

Conclusion

The GST refund under inverted duty structure is a significant facility for businesses dealing with cost-heavy inputs and lower taxed outputs. Filing this refund correctly and on time can enhance cash flows, reduce tax burdens, and promote smoother financial management.

The GST refund portal offers a streamlined and transparent process. Businesses must maintain clear records, match filings accurately, and follow the step-by-step process to avoid delays or rejections.

Timely refunds can greatly benefit manufacturers, traders, and exporters, ensuring the GST regime remain equitable and efficient for all sectors.

FAQs

Q1. What is an inverted duty structure in GST?
An inverted duty structure occurs when the GST rate on inputs is higher than the GST rate on outputs, leading to excess ITC.

Q2. Can I claim a refund for all goods under the inverted duty structure?
No, certain goods notified by the government are not eligible for such refunds. Check the latest notifications on the GST portal.

Q3. Is there a time limit to file a refund claim?
Yes, the refund must be claimed within two years from the end of the relevant financial period.

Q4. Where can I apply for a refund?
You can file a refund application on the official GST refund portal

Q5. Is a CA certificate mandatory for filing refund?
Yes, if the refund amount exceeds Rs. 2 lakhs, a CA or Cost Accountant certificate is mandatory.

Q6. Can I claim a refund for multiple months together?
Yes, you can file consolidated refund claims for multiple tax periods (usually a quarter) in one application.

Q7. What happens after filing the refund?
Once filed, the application is processed by a GST officer. If approved, the amount is credited to your registered bank account.

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